PhyloNet

Packages
phylonet.cmdline  
phylonet.coalescent  
phylonet.consensus  
phylonet.fitchpars  
phylonet.ilp  
phylonet.junit  
phylonet.lca This package contains implementations of algorithms that solve the Lowest Common Ancestor Retrieval (LCA) Problem.
phylonet.mast This package contains an implementations of algorithms that solve the Maximum Agreement Subtree (MAST) Problem.
phylonet.mct  
phylonet.network.characterization  
phylonet.network.io  
phylonet.network.model  
phylonet.network.model.bni  
phylonet.network.util  
phylonet.nj  
phylonet.recomp This package contains an implementation of the RECOMP method - a technique for detecting regions of recombination among a set of sequences.
phylonet.recomp.comparator  
phylonet.riatahgt  
phylonet.riatahgt.viewer  
phylonet.sequence.io  
phylonet.symmdiff This package contains implementations of the Symmetric Difference that is calculated on pairs of trees.
phylonet.tree.io  
phylonet.tree.model  
phylonet.tree.model.sti  
phylonet.tree.util  
phylonet.tree.view.swing