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| Packages | |
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| phylonet.cmdline | |
| phylonet.coalescent | |
| phylonet.consensus | |
| phylonet.fitchpars | |
| phylonet.ilp | |
| phylonet.junit | |
| phylonet.lca | This package contains implementations of algorithms that solve the Lowest Common Ancestor Retrieval (LCA) Problem. |
| phylonet.mast | This package contains an implementations of algorithms that solve the Maximum Agreement Subtree (MAST) Problem. |
| phylonet.mct | |
| phylonet.network.characterization | |
| phylonet.network.io | |
| phylonet.network.model | |
| phylonet.network.model.bni | |
| phylonet.network.util | |
| phylonet.nj | |
| phylonet.recomp | This package contains an implementation of the RECOMP method - a technique for detecting regions of recombination among a set of sequences. |
| phylonet.recomp.comparator | |
| phylonet.riatahgt | |
| phylonet.riatahgt.viewer | |
| phylonet.sequence.io | |
| phylonet.symmdiff | This package contains implementations of the Symmetric Difference that is calculated on pairs of trees. |
| phylonet.tree.io | |
| phylonet.tree.model | |
| phylonet.tree.model.sti | |
| phylonet.tree.util | |
| phylonet.tree.view.swing | |
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